Scaffold Ga0207694_10001291

Overview

Basic Information

• Taxon OID: 3300025924
• Scaffold ID: Ga0207694_10001291
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21600
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015787	Metagenome	252	Y
F092590	Metagenome	107	Y
F098010	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207694_1000129111	F098010	GGA	MAKTERIKVEITDSTESETRTFKIILTAPNSDFQLADLLRQRGVIPPINGELKQAVKVATQNYLAGAEERISTLTKVSTATPKAGNTRNRKDRNATRVSPTSANASELQKGSIACSN
Ga0207694_1000129119	F015787	AGGAG	VDQPTVASGTLVYLPEQSLAGRWAQACFKAAIFLRMIQPLVVFGGVAILVLVSTVCPVAAQTGGPIISGGNPNAPITGIQNLVTLGVWLLIAAGIGGIGWALINGMRRQSWGAQLIFGAACLGFGGIVALWNEYANGRSPDLPAF
Ga0207694_100012919	F092590	AGCAGG	MASQNAFTEEGRTRLRNFHRRVSSYLIVWILVGVGVTILAGYLRTRYGYRPLQRLYLKQYIRASTKSFLPLKKPSKYTVLVRVIRDPRTGKDLVFGCTDDQVTPIRDESGRVKFDPKLGPFFELQPGIPHTYFYWRSLPQMDKQMYVWFRDQIYNGRSLIGLYWICLLPLPLILIVGMVVSVRLDLRMNREYEAGDLLRGVRLLKPKEYSREIPPDGIGIGVPALLPEMRKL