Scaffold Ga0207694_10000003

Overview

Basic Information

• Taxon OID: 3300025924
• Scaffold ID: Ga0207694_10000003
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1165533
• Total Scaffold Genes: 1098
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 614 (55.92%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001605	Metagenome / Metatranscriptome	664	Y
F008640	Metagenome	330	Y
F010067	Metagenome	309	Y
F010196	Metagenome / Metatranscriptome	307	Y
F016574	Metagenome / Metatranscriptome	246	Y
F022212	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207694_100000031053	F010196	N/A	MSGPRLIVGIIVMGIAVPATIFFLLGLHTPSQFFTVAATTFLAWGLADLLASILERPRLENRSPGMAIKEDLERRRDDLSS
Ga0207694_10000003115	F008640	AGGAGG	MTPPDPYDIRRIFFTPRPNLPLMTAAERLGMTLQELKRDIADGAIVAVSTRVGTRVTKEEMIATAMRLWDLSVIEEALGDDAPRLIPEAIRLVELRARVPRYQRDVLRELARRGGTSVDAVLTRELEDVACAHAEELSGVLPDLAAALAWPGVMA
Ga0207694_10000003290	F001605	N/A	MSVTQSEPQTLSEVPFKVLDETLRQLRSTRNDIIRYGVWNTRNLTDDEFNHADDRKLLGYFRQDLLETRFLSKGRKIDLIQLWHWFDDQMTGTEPMLINGEEHFVNVQDKDLEKVRKRISEIQSFLPTLRGDDLEAFKRVKYKLRRTVLRLTYDLHHLFKRLEKYRKNFGGPMAPRADRIPLEAAVDIPEPPPIDEHDHDAE
Ga0207694_10000003376	F016574	GAGG	MLEIDIVDRIRHIFLHPRPHVSISQATALLGWSRRRMSEAIEAGEVELWTTPVGKWFPRAEMMAKALEVWPLHVIEEALGADSAGVLPQAIRCAELRVRLPRHHIEMLEYRADQQETTVSGVLERELDGIASAHIEELSAALPGFAEAMAWPAG
Ga0207694_10000003696	F022212	GGAG	MRRFLVLLALAAVSCGGGSPDASDNSSEWLHVLRHKQAASAPNAPVHAKQAYADTLGAFVVKHPTHSRAREVYQHIQLDFAHELAVVGRHQDAIRIYRAILTHDPKNDAALKGLADSVDHLAVSHEKLLALEKGMSQRDVAHLLGKPIPGWQVTNDRPDSTIESWYYRRTGGGIAGVYFRDGVLFAAEENSQAKIAPLMRQ
Ga0207694_10000003850	F010067	N/A	MTEDDQRSDEARESFAYFSNEYAQALQAFKTIEGQSSTLLLMGVSDELRGFIDQFITMASGTKALAEERDETHFAEWFGELIRKAEVLRGEIVPQ