Scaffold Ga0207694_10000002

Overview

Basic Information

• Taxon OID: 3300025924
• Scaffold ID: Ga0207694_10000002
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1165763
• Total Scaffold Genes: 1099
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 615 (55.96%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F002548	Metagenome / Metatranscriptome	549	Y
F003710	Metagenome / Metatranscriptome	473	Y
F006090	Metagenome	382	Y
F008503	Metagenome	332	Y
F010845	Metagenome / Metatranscriptome	298	Y
F013826	Metagenome / Metatranscriptome	268	Y
F043999	Metagenome / Metatranscriptome	155	Y
F054444	Metagenome / Metatranscriptome	140	Y
F095945	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207694_100000021078	F010845	N/A	MVACQKAEPLTAEKANQIIEGYRFAAEPIYAEVPQKVFWNPRFPKDEYDERSLRTFDNLRNAGLITVTGGPTPDGAEYIAHVTPKGFPILGTSPSARGPVFRGLICYKVYDGLRNFQRHPTEQTTGHGELAWHYTRPTPLYPLFETKQNKPLNKTFVSLVSFYYKDHQYRFDVTVRKTE
Ga0207694_10000002115	F008503	N/A	MKKALIVVAAIALVLWVISWFRVPDAVMKSAARPWPGGGTLDSVDNRFPQLQANSASVKLMALANALPKTEAAGDFVAREIARGELTIGGLPALHDVSAIRELLLREPIVWQRREGIGGGNDLNAERAAQMSVARTLVASALAKARANDPSAWEDLHAAWKLARSLDGHPQMMVQTAAFSIARMINAVAWKMPLPAPAWLGELQARDSVPPLLESFQYQSASYAKDGLRIFPTKMLADSVDRDRGIAETLVKETRCDVNARENELGTDLRFVWRRAFRYRAEREATSNALRIREGKPIEPASRCSDGGWTFDGTTLRFTREIATAAPDRPMPLTLRVRP
Ga0207694_10000002213	F013826	AGGAGG	MAVCWRCPSCSEVSCEDDVNATGNPVACDHCERPFPQQETLCTVCDTPNPWSRRDTLHFLCRECGTAQTYFSHLPMAG
Ga0207694_10000002328	F001519	GGAG	MTLVNSLCAEISIYQGVGEQTGVQVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPIELWPKTKEPVVVHKHDWTVIGSIPRTSRAEKKRPKRAHAEQL
Ga0207694_10000002368	F003710	N/A	MRVMLIKGMTEQEIRVLQEFRRVAAESLGVAAIKAIKHPAGGGEGPAFSLVDKGMLTTDAARENFALTAKAKEFLSYDPKPEFEEAGSAAEEPVVVE
Ga0207694_10000002401	F002548	GAG	MGKYAMDSTMEVRSPIFERRRLRRIRMIVELTLNLVGSDMTVSHREARCLVRCARKAILELHPGFEQRYERIVLPYFERMLASRWPHEQAFDDDCCDVVN
Ga0207694_10000002422	F043999	N/A	MEKPVRRTLLPGVSDAGAPPPVVIDSRVVVARARRRAIVRDVIDLLLLVCVDGLFLRWNHAHVPFLDRHDSLLVLLALNAMLVGYVWLARALPRWTARKVAATWCLAERTRFFRS
Ga0207694_10000002663	F054444	AGCAG	MSSRSSAQPRRSWASDVYKSLDNTKLVKFMESQALFHNQFQKFGNVRFDKTPNHGRMLCNDYPVYSPIYCASAVGFYLESILRHGGTDPAVVETKRQTLGDSHCAFEMTWR
Ga0207694_10000002665	F006090	N/A	MSLLLQRKGPAAPLPRLEGKEVLVGPNPDAAKVKGVMFGGRKQFLNEVAGEEGFAAIIAKLTPRTASYTKTPLASSWCEFASVIELDRTVYETLKQKYPNVLALIGASSAELGIGRVYKSLDSTELVKFMESQALFHNQFQKFGNVRFDKTPNGGRMLCSDYPVYSPIYCASAVGFYLESILRHGGTDPTVVETKCQTLGDSHCAFEMTWR
Ga0207694_10000002953	F095945	GGA	MIAVLALFFATAFPSNSKTSWMRPESFHLTIGMNRAAAVKALESNGWHTKKGDAAGQLVVDYADDKSLTLQFAGERLTSIRFELFTILQDAPKAFEEERAFLRQSLGKPRQGTKKILIYDHKLPNVMAILSADPKSEQAQKGVGMVVVRYYDPAVK