Scaffold Ga0207681_10255533

Overview

Basic Information

• Taxon OID: 3300025923
• Scaffold ID: Ga0207681_10255533
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018956	Metagenome / Metatranscriptome	232	Y
F023245	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207681_102555332	F018956	AGGAG	MTDCRRCAQEVDRAFRYCPWCGAPLRIKVTELFQGADGKALRVSRYFGDDEREPEVRVSLWSEALERNLRAEAAVSLSEEEAARLAGFLAETTAPDEAQTL
Ga0207681_102555333	F023245	AGG	MNAGRGTTRRNQDVFRSANERLLVAVADQIEDTRPIPFLCECLDPACRSTVQLTVGQFRDLREKQGYFAIVTGHPTLDDERIVETDGDVTIVVKAA