NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207646_10082469

Scaffold Ga0207646_10082469


Overview

Basic Information
Taxon OID3300025922 Open in IMG/M
Scaffold IDGa0207646_10082469 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2875
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004349Metagenome / Metatranscriptome442Y
F006952Metagenome361Y

Sequences

Protein IDFamilyRBSSequence
Ga0207646_100824693F006952AGGAGVIGPLGTANHEIREAERIDQERRRALLTEPRRLTDQLLGQLEELNLDGVPIVPGSYDPGLAEIRSHLVGWPGIGARLLQRLQSGTRTVELIETVFTIQEVIAPPTLPAGAVIFEEPDLV
Ga0207646_100824694F004349AGGAVKAKPRATLAIAVLMLAGCTSTGNPAAKLPTASEILNKPDQANVKDAHFTLVAHVVSAGVAFDATGDGAIVVKQAQASKFTMTTTIAGQWLRFEEIIIGGNEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLKLGKAWHVKAKDVNGSPFEAWVRESDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPASDVQS
Ga0207646_100824695F004003GGAMTKVLRSVPAVVAASLLAACGGPGTPLGPPSPQDVLSKPVHAGNLKDAHFLVSGKFATNGATVGVTGDGALLYKSPGAGRFKFQTTVAGLQVSFEDVSINGTDYTLTIPGNGKWVAKASTSGLGPSSFTGTSAFKYVGEENLGGGKAWHASAKDKDGNPFDGWIRESDGYPLKYVITQQGNSLTLTFDKYNTGVTIAPPPASQVVKG
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