Scaffold Ga0207646_10051769

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10051769
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3673
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002225	Metagenome / Metatranscriptome	580	Y
F023055	Metagenome / Metatranscriptome	211	Y
F052747	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_100517691	F052747	N/A	PDAPANTDTVPAKFSQKNAADDELITIAYTFKTLGDDERRAIYEALKGQQAGSAFNADIGTELPPGIELRPVPDDLAARVPQTKDYSYAVTHDRVLLVGTSRVVAGVFADANVPVSQGRRGP
Ga0207646_100517693	F023055	GGAGG	VALDSIVRTVDAFFRHWDDTEKMWSEYERGGFRLVVIGGELRLSELRPSERMKYRCKHRRLVERWRDMRLEGSKLDGVADAGALHEGRKLGLFEEMVEGSDLGCEGNLPLSS
Ga0207646_100517694	F002225	GGAG	VPFQSVARRSEFLRFGAINLLQPTVLVSGGWFMNEISRSNRIKNVLSLEMAREHARQPRGSPNGHVSRRSNQRPLERLEAENAQLRECVADLMLQIRALRDGGK