Scaffold Ga0207646_10006736

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10006736
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11829
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006078	Metagenome	382	Y
F012855	Metagenome / Metatranscriptome	276	Y
F014244	Metagenome / Metatranscriptome	264	N
F058833	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_1000673612	F012855	N/A	MSLGYSPETKEKAALSGSPWEKTGYVTIKKTGQRSLVLKVLANEIVKTRQKEAQAAEPKK
Ga0207646_1000673615	F006078	GAGG	MQALKTAGLGAVTPLEPEVKVAHQSVFYALHTRDGTCASGCGVSQTGVAEIVFGVEIVEWDLCSACLSRTGFLEYFNSLPSATPREAWEIKILLGISNETFERQNRAAQPIN
Ga0207646_1000673616	F014244	AGG	VAFGEQTYTLLTEEARARGITIQELLRAVVIPDWFKAKYEPVPRQNPIIERRTNEEEPVVPYSFSNKLRY
Ga0207646_100067363	F058833	GAG	LTDVAKDPGWMVNPVLFIIVVGLTVLFVAAILYQILGVR