Scaffold Ga0207646_10005614

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10005614
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13176
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002983	Metagenome / Metatranscriptome	515	N
F024988	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_100056142	F024988	AGG	MNRLPWAPLNAGVFLIIFGGVILLSFFNLGVLNLGTAFPLIFTFFGAWLVIEAFVIPPANAYAPPRTMVVGWGALIAGLGILWFVGATNVELLPIALALIVVIAGIGAVGYSFMRATPSTPKSSTP
Ga0207646_100056146	F002983	AGGA	MTDPTVVIIGSFLLAFKAILIEGSEVAILSLATIKQLGRNNILFGVIAGGLGSIVTFLVVWRIFLLLPAIVIDFATAVVLFYFSSRFLRGFVKYAFRHKSFREKMARMGKEAIDKDLKREGAIDSTQPIRFSVPNSLPVLTITLTEGFEASLVLAAAGAFNIQWTLIGAAVSLIVLVAVSAVSYDYLMRVPRWLLDLIAGIVLLSFGLIFFVSGIVSALTGTA