Scaffold Ga0207646_10004028

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10004028
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16237
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002143	Metagenome / Metatranscriptome	590	Y
F008809	Metagenome / Metatranscriptome	327	Y
F025584	Metagenome / Metatranscriptome	201	Y
F035065	Metagenome / Metatranscriptome	173	Y
F037102	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_100040282	F037102	AGGAGG	MNERTPDLTQQVLQPAMHQKLLLRAAELVAMGWTRGTAARDATGQKVRSTAPQATAWCVVGAVDRALYELLNVDVYDLLGLEVDAYDTAPCPLDMLRKLRRPLQCVLGRRDLAHWNDHVCPGPGAAEQLLREAAAAAARS
Ga0207646_1000402822	F008809	GGAGG	MKRILGYLRDEQGIETLEWIAVGALIIAVALVVYPGTLQGGLITTVTAITNKLTGIVK
Ga0207646_100040283	F035065	GGAGG	MTDREVEAISDFLRHFGSFGCRQICVRRAEPKPRTPEDVGRFVLEILAAWRAEGLDAERLYKVATTAIHFEAYMLPGPICMPACCRPWGALEPACPPGPGRPLTGAQLQQALLRAVPIGPPPAPDAPLPDDLDEDLKRTGLAP
Ga0207646_100040284	F025584	GAGG	VGDPRLDEPRRWGVFWIHHEAEELRVHHRTTIPAGHARALVVTLLASGRVPPLQATLFDSESAHARPGLERFWGTTCRCDAVVYLILFINERCLVLALSGGALARACANGRNRRHHDRTNGGEQ
Ga0207646_100040286	F002143	N/A	MAHTPDPNEAIQRFLGQWSPLTRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNADGTTYPTEEDYFRHVLGLASWRTAYKRLAIGRMLTRFEEPERSLLRSSLAAVGLAKASVVAPAIERVEEWRTWLQCASEMSTVLLQAKVSEALDALPRGREPAPPGERFRRAVLGAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWELQAARRPRGSAAASNSSVCPRGQTSV