Scaffold Ga0207646_10001895

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10001895
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25182
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F040993	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_1000189516	F014771	GGAG	MKAKGSITQLLRNQRPGYILGEDGCLVAFDESALEGLDPRELSVGDGVEYEELDSMQGRRASRIKPLIHRAEE
Ga0207646_1000189518	F019704	GGAGG	VRSRVKIGKLMQREGLSGEVVTLFHSRSTGIIHGDDGYDVTFNEESLVVGLAYSEIGIGQRVSYGIFFATGAKVPTAINVQPASGRRTEAMQDSESTLSPRAGGFGAV
Ga0207646_1000189520	F040993	AGGA	MAAGSEHEFLLPSWRVRRVDHLRSVKDRSKGRWAKLLRAGQSLVCLLLLLVILRVFGQGLLMGVAGAALVLLLQEAVDPTPLFWTAPWEAMQLLLSRARRINHVWLHRTQELARESIGLSTKVGGFAMADGFVLIGVGSNKQLVQWTAEAAWRGIIRVRERARHSSGCKAVRFVISVWLMTGVLLTLSVWRGIDLPTVLLIAVSSGAAGHALAQPFENTLGRWLAVPAWHDEDARTFCLEVEPVEFPEWLWWQGGQGFIVRRIPEEEAPKD