NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207646_10000149

Scaffold Ga0207646_10000149


Overview

Basic Information
Taxon OID3300025922 Open in IMG/M
Scaffold IDGa0207646_10000149 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95761
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003972Metagenome / Metatranscriptome459Y
F028267Metagenome / Metatranscriptome192Y
F030079Metagenome / Metatranscriptome186N
F031949Metagenome / Metatranscriptome181Y
F084195Metagenome / Metatranscriptome112N
F105763Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0207646_1000014912F105763N/AVRSFLWHVREGSFEGPELASAYRYRPFTVREPHLGTDDIFLQDDSGPWRVIEFRRTEVPKSDGNVLVVERAVV
Ga0207646_1000014913F084195GAGMSAEYDVARQQRLRRALEAIADAYGFTGELRRERIGEWWLYPSSIGYDREQEIAHQHGLEVKFDKEKIDEFRQLVAEAQRNGS
Ga0207646_1000014920F030079AGGAGMSPLTPAERQALRLRAEKPDEVFSGRTVGELILDVRETHADASTGLLGAALDAILAQCVAEPFEPWPRSLVAALVASCK
Ga0207646_1000014928F028267GGAGGMRRHYDERTGRPLVDGCDSIQDLSDNEIEVELTIASAEPKHRGPRLDALLLERARRRRLHDLQPV
Ga0207646_1000014964F031949AGGAGGVDSPLAMDSISVLSPDQHVLHGGRRATFLRMNRGEAIIRYWGDSHAVSVPPEALALPKTRSRRPPLAAHDEPTTRERAAGERPAS
Ga0207646_1000014993F003972AGGAMHLDPHVAIAAVSTLGAAWLMITAGLQKSALERRRRRRVCPSCGREIQARVCSSCAG
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