Scaffold Ga0207646_10000098

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10000098
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116686
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (71.21%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F002941	Metagenome / Metatranscriptome	518	Y
F003985	Metagenome	458	Y
F005204	Metagenome / Metatranscriptome	408	N
F005236	Metagenome / Metatranscriptome	407	Y
F007071	Metagenome / Metatranscriptome	358	Y
F007642	Metagenome	347	Y
F008127	Metagenome	338	N
F012444	Metagenome / Metatranscriptome	280	Y
F012766	Metagenome / Metatranscriptome	277	N
F015713	Metagenome	252	N
F023303	Metagenome	210	N
F027130	Metagenome / Metatranscriptome	195	N
F030713	Metagenome / Metatranscriptome	184	N
F031837	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_10000098119	F002941	AGTAGG	MTEGAASKRINIKTLTMLVPESIVQEDAEKKRVKKGILGGSEERFVFGKTLYLPYLEFSYQYPTVKGVFSKQTVLAQGRSAVMALREVNLGFYPELVSLTSQLTEEEADYSSVVPGVDSTTLVRERLDELRRMLSEYDNQLRELSKQSDSLTKTDRARQDLKENIDHLKETRENRWKIFADGLKLPSKIDMEGFECLEVNLFYMPYFVARFSRGGESRFLVWDRQGKQNETIAEELMKNGKFRDLIQSYVTHLGI
Ga0207646_1000009824	F003985	N/A	MTTREPASTTSPPKSNSLLLDKYSRTFLLLLSGINLVLGAIFYSVPSSVIPSWPWPVKELAVRFLGAIFLAIAFGCWSAVHAELWQRAKILMLVGGTFFGITGIVSLVQGITVSSDASTWVWTGYFLIAAAGCLLLLQRHGWHRRQAETPTSTMPRGARLFFGIQTSVVGIFGIMMLLVPGLAQQEFWPWKVYVSTLQTFAALFLATCLATGWATRQKDPERIKVLLPLDAAFPSLALLAVGIGWNTILAESPSWYVTSVWVGLYSFVAAGSTILYFTLREQRR
Ga0207646_1000009832	F012766	GGAGG	MEALREEEVLALEEELLRRLEEKLTPLVERAAVDAAKVAMHELRLDLMNHISRHEDTIRRLKRTETALNHIPTTR
Ga0207646_1000009833	F027130	GGA	LIGDSGEKPVLGKENSKENKLNEYFRRRCSNYERFLCDRVWECALCAKQAGKVETLELSTVTKVEALRRR
Ga0207646_1000009845	F031837	GGA	LRLVAATSDLFLRSRITELAKQTGADPFFGTGHDELRRLVAEKRPELVILDLSSTDYDPFTVAHELKTTFNARLFGLYPHVKTELKKRADEIGFEYVVPNSNFLFSLKRVLLERAEDD
Ga0207646_1000009850	F012444	GAG	MGKVMISLTDEAEELVRDEVGKLYFGRTGGFSIFFEQLIRKYFNGHMKERKSK
Ga0207646_1000009853	F005204	N/A	MSQRGLFRLVHLPPDLATQLKDSVEEAFQSLGGATAELILHYARRRHHVDMNKLPDGIEELDKALGEILGTGRRMVVNHCSEILTRRLGKEVRAKSDKLSDVFRQVAKIYQQRAAIQQDETTIFGSAEKTDDSVLQGNAVEGILRD
Ga0207646_1000009870	F007642	N/A	MPSLTVREAVTAPEKPLADVLVEGELSPFEHEALYRILRKGFKLEHPSYIELLDEDLATRVNVTFHYPYVATVFTDVLRENWRDLKELLRQVRYRRGKAGAAVTLSFIDDGRRLVFNSGVLEEKELSSALDQVGHLTGILAQMLRPETMEKPLQLVEAHYDKKSDRWQEFKGFDSLDEKQSYVFDESVFRWVRS
Ga0207646_1000009871	F008127	AGTAG	MSDEFLPRAHSRRLGELERSNWKSLRDGRNYDRIDPAIREIVALLNRKGYWTFSSCSGGHPTNPRWKINRHESGYLAFSPPSNVAFALYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCTRFYWQLSDRRKHKLEHYGRLFAQMKRIIEDLPTAPGDGMEVLSGLFGKENLQTGVRIVKGQMRRFTNS
Ga0207646_1000009874	F007071	N/A	MSGLSLRLTEIRSLLLPVSQFLAWPIFFFLTSAISQQPAYFLALLLVLATDVIDKSPGRRGLFRDLVAGGATTVLALFLNDLDGITVGAIVAIAATSRLVLKLH
Ga0207646_1000009879	F015713	GGAGG	VKFSWRDVAQDAEKHAHKMAEDIFALEPDVTEEVDLKALFERILGKEDWTDKLAANLGRVKGLFHRPQKETELPEDLKLLIPNMKDVENAYVEITSGYKDFIKAVWVAQHERQWRE
Ga0207646_1000009884	F002266	N/A	MTSQLVRKAEAIRIREHRLKPTLRRKTEHEIIEFIHKQGLVSALGGNELPSFISAILGKPWKPSRKGFSGWMDWWSINISGQPVARISREIEGRKDIIATRIFRRTKTFVSSKLWPILDPIVKHHQDLAGRHQILSDMETRVLETIETEDSIRTDHLRKKLGLEDKENNSRFHRSLYKLETYALIVGVEDPHPEKHLHANIWQTWDKRTRQQKHPSSLSYNEAQRRLLVKTVDACVLVLENQIPSWFKWSSDMQEAKQQSLKDGAILKSGRYLVSSKI
Ga0207646_1000009887	F005236	GGA	MGFLSIMGKILIGLAMLTLPVAVSLILVFSETLTTIGVAISLGASVFVFFCGIYAGFLGIKYERLQQKFDSFVNPLRIRSSAVNLIKAICPIDHGEVVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIEVEQPAESA
Ga0207646_1000009890	F030713	GGAG	LTEKKRLPPWEEAKLVFKMQEETRKRKLLEVDMQHRRVRAKRVGPNTSDELEENRKRLRALQERIEHGDDE
Ga0207646_1000009893	F023303	N/A	LSFSQKKFPLNPGLLLIVALVGTLATTVISFTLIVLGRGGPSLAGSGIGSMSLFAFLLTIQVLHGKSESKDDFVKKGAIRTAIATSFTVAYLMLLALGLDSGLGLNLNNGILANFHLVYIFTIGTYFITASLERIVDLVKGKSSLFG