Scaffold Ga0207646_10000085

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10000085
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 125486
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (66.13%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001350	Metagenome / Metatranscriptome	717	Y
F010753	Metagenome / Metatranscriptome	299	Y
F015567	Metagenome	253	Y
F018147	Metagenome / Metatranscriptome	236	N
F024071	Metagenome	207	Y
F026234	Metagenome	198	Y
F039971	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_10000085106	F039971	GGAG	MRIVAWLLVAAGLVVTGIGVAAALGQAGSGAQPWGNELSDNFVFIKALPFVLGFGIAVGLVMASTYGAKTRSDGAVRRWSPGTVFGHWVLTLGFVLALPTGMWQYLGGILDVNLPIPLYLFYRVHYIGASIVLFAVAAFVSYLWMTGDRSLLIRRGEWSRHLLGLAFELPPSLRGPYAKLLRIDLSQPRPPMGKFTFYEKVVELPSWSILLALITVTGLIKAGRYLIPVPGFVLWLASTLHVATMVAIVIKLLDHLRYTFTRWSLMGAITTTWMKERAPAVRQGAGERGSSAAGIAGGGD
Ga0207646_10000085111	F026234	N/A	VADGSHSALSGQTSGGESPLLVSTIVCAYTQAELPTPWLAIFHRFERTMAKAGLRIRVRLFPLEELPGAFEVLVVPPELEAAAQALQTGARIIVTSRAEAPAAADLLLREIERGETLYAEKVRQGEPKIMTHRGGDIL
Ga0207646_100000852	F015567	GAG	MTVLTIGVVCVALAFFAALAFGPGQRESQTPILTLSAPALPTMARPTFNTRPVPDRTLVLSSDDAVSTFRITSLGQTGLVNNDAVATTYRLRATGDLVTVAPLPQSEVLPYAAPLVLDRPLRIRGRPAEATFTVNGTTAVRWLENGTVFEMSSRTLTVAQLAELANRLR
Ga0207646_1000008532	F001350	AGG	MSLLTNGREELMDAIVLAVSQENADALLDGKRSTDHRALPPTRLPARAYLAVVGTGTVVGECVLGERAGRTAKGWTLPVTKPRRYRRARPLADFGLARTPRSFRYVAK
Ga0207646_1000008572	F010753	GAG	VDWIGAILERIRTMECPACGARLASCAVRGVTAEPQAIVVKLACTVCGESSVAIVERDGENAPALTEDDVLDAHDFLQTWHGPVAELIETA
Ga0207646_100000858	F024071	N/A	VLILIGTALAAAGLLAQRANEPAPTPAPTATPKPTGALIAPRPQLSALALPAGVTDVELSAFPDWLANEPPPASLRAVVAIRGTMGIASVEGLTVVNWTEHGVSYRLESLARSVPELVVLADSLR
Ga0207646_1000008599	F018147	GGAGG	MATIKLPEESQHNDMVKKVDAMIREISKSPRMSAATRALGLRPSILIGEHQELAHIMAKRGLLNLQNHMIGLAVAAARSAPYELYEHTRVLQLEYGLDSGQIVELAATVAHVTSINAFEKVVAAFNDNAPMRAQDPSTPVLVEVRQKLGSVPRYFLYMANDPRYTKIVLDREIATVHEGEVSRLNKELVAYATSVVNDGKLSILYRAEVLRSLGLTNEQLFEVTTVVSIFVKNAAFTTALQLEPTQA