Scaffold Ga0207646

Basic Information
Taxon OID	3300025922 Open in IMG/M
Scaffold ID	Ga0207646_10000014 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207646_10000014 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	345047
Total Scaffold Genes	366 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	235 (64.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

345047

Total Scaffold Genes

366 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

235 (64.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011779	Metagenome	287	Y
F014369	Metagenome	263	Y
F033731	Metagenome / Metatranscriptome	176	Y
F043271	Metagenome / Metatranscriptome	156	Y
F070667	Metagenome	123	Y
F085281	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_10000014179	F011779	AGG	MSSLLRGIWDNTYGLLVDDGQLAVGAIAALVVTWLVAQSGAFQENAGWLLLVLVLALVVANLYRAGRNARRQVA
Ga0207646_10000014223	F033731	GGAGG	MSTVIHFECQNTTHLASRSRGGVGGIVIHHGTFGYCDGFASDSDHRWVPTGGVFLEQLIREEVDDRADDARYVPNAIGNAGPLHLAR
Ga0207646_10000014226	F070667	GGAGG	MAKGGLIHYVCIADAHMSSVRTSSSDTLTVVSGRWAFCAFDAKGEGHDWRETEGVTIEALRSGFPKGRLAQLPAEDRSR
Ga0207646_1000001425	F014369	N/A	MLALAAVVVIALSACSGSQAAPTASATLGCAEPTRTVFGSSPFDDQNRATWKNDLAAGMACDKATSAYDERLNEKKAEQLFANASNFAMIGRVTDATSGAPVDQVCITPGKPGAICWSRTDKDGWYLLDLGAVFAHEGFYEIFFVKAGYPEQHSVSRMLSGHARIDFQMTK
Ga0207646_10000014275	F043271	N/A	MGNDEEAERAVERWVRLGDEVVTGKMGGDRDDKSTRACTGCGTKLNILASDDSALCARCFLERGTNRTIE
Ga0207646_10000014338	F085281	AGGA	MRGFAKWLNSPIGQVIRDIVEGGIAGALAAVLALQLDVATPQVIWAALLTGFISAAIAVARRKLVSANVPPSSAPPQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207646_10000014

Overview

Ecosystem & Geography

Associated Families

Sequences