Scaffold Ga0207646_10000004

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10000004
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 529176
• Total Scaffold Genes: 562
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 348 (61.92%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004299	Metagenome	445	Y
F009835	Metagenome / Metatranscriptome	312	Y
F014367	Metagenome	263	Y
F015307	Metagenome	255	Y
F021272	Metagenome	219	Y
F045018	Metagenome / Metatranscriptome	153	Y
F048141	Metagenome	148	N
F057173	Metagenome	136	N
F070962	Metagenome	122	N
F077093	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_10000004150	F015307	N/A	VAIFAIAFLYLRPPERALSDAEYVAIAKATPQGQLFFDKYDAPCEVTRVWTVQVNCDYLPAGATATEKFRVHIDPRTNAIIEVEAQFTPR
Ga0207646_10000004204	F014367	GGA	VLRRIAVLLPLLLAAACQVQLPSPFASQLPPQLPLQLEIPDGYRGYVVLQYALASCAVLPRRDGHTVIRFADDGRACTSETTVEPTLKDTAFYISPSGEHTGELLGFDVDFEQRQEATHRIIGTVFAVAPDPFVIQAIDQCRWEDANCWVGLRSR
Ga0207646_10000004223	F004299	GGA	MPLRRGEWGLALFLYFLLTVMVGADWVGKLGADALFVKRYGVQNVPWMYIITPIAMLAVSALIFFFIDRMRRRTMLLLYVAAVTLLSVGIQYAITYNAIGNIVQPISYVFAHGVKETIYILFWVYAGNLYDSEQSRRLFPFFAGSVLVGKIVGGFVGAAIAPLIHAENFIGAQAVGFFVCFVALVLYRGLPEGRSGRAEVKDRPQGVRATIRESVDGYRAVTSDSLLRTFGVGVFFWYFLMQFANFLYLLGLDQSSVGATSVGREDFFAQLYASVYTSSSLVALAIQSFITSGLLRRIGIAWVLFFLPLWFVGTYAAAAWFNLNLVTGVALQLGERIWIPALHRPASELVYSQVSAAIRPRARAFLSGGVNAFGNMVAAVSLILGLRAVDLGLFGVRTLLGIGASLSVVYLYNAWHVRWLFGRRIAQNLTSPDPDLRRNAADMLASESSAVPEDVLRSLGGRIPADVEHGVRLALTRRGILAVAADVTD
Ga0207646_10000004261	F009835	GGA	VTSVEGAILVWLAIGVGIAGGVFIVARSAVQIASVAYRVIEKEMDARTATRQTTLLSLAIVAALIVTAVIAGFAILVMFATLLEGSGLINGT
Ga0207646_10000004311	F045018	GGAGG	MVGRKCCESGCDKHAVQRSLYRHALNALQLASRSGCASKEALELAERCEELLRAADGGELQSVAQRR
Ga0207646_10000004371	F057173	N/A	MGDGDPVGGALLLGSALCAIGASLVVCYVIWLNTWEGWESWNARTGLDAERANEERLLGK
Ga0207646_10000004445	F021272	N/A	VVVSARDKKALLTLLEQAQLVYLLTRLPKKQVLDDPKDVARLEQGLAAMRDAARELSAALREKHTAVQWDELAATPDSPDLLWRRAKRVGPQVLRVLRPLLEGEPEAAFMLDPNAETAKKVKEASRRARPSLASRRRPARK
Ga0207646_10000004506	F077093	N/A	MFFRSSPRFALASALVALLISACAPPPRANGPDASPTGGLSLPNLFAPAITPLPISVTDAKYGLLSARTAPGARCQASLRVTAGVYGDAPPDTLPGQSAGADGFVTWTYSAPRVPSGTAGYTVRCQGDAASETKTGNFSIPTHPIVATSLTVRVTTDTPPSEQFNPIPSLVPLRDATLARIKATLAAEWQAATRGLGSLQVDDRSADITMFVVAANSTSVHRRNPADDSQDIVIYVSDPQLGVRSVENNVAVALHELGHIWCCYGPDANDTGHWTTKLASPGLYGVDKYGLMTDPVTCVSFGAVLSCPNRFSDREMVALGFTNFPPPAPDPCITQALSLQSQLNSLGAQIRAIEMQYPRGIPSAIYDSYVAMVSQYNSLVSRRNALPCDPS
Ga0207646_10000004537	F048141	GGAGG	MSQTNAIILRIKADRAKEFERLFKKHQYPNWKKHHAKGGMLAASLTRVAYGVEEEDAKQGGFVNYIVFAKLTNQRAHDAHDNDPDFKAWDEMAEQFQTEGPSVWGGRTILEIG
Ga0207646_1000000455	F070962	GGA	MVMAPQSPHPEGDVTVVLRVTYNTLEAIIRDEFMLTESRVSH