NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207652_10546651

Scaffold Ga0207652_10546651


Overview

Basic Information
Taxon OID3300025921 Open in IMG/M
Scaffold IDGa0207652_10546651 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010678Metagenome / Metatranscriptome300Y
F089982Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207652_105466511F089982GAGGMALNNLRSEVIELRNEGLEKDKILNSLLNKIKEDEATSKAQAEAQKCEIENLQKQLAEAKLKCATAEADRDASDYWKNHWEKTTAELRSSKERCYEKSMECVGKIKTSFASVGAYSNEGNFVLGDPEGPIDWINGEAEAFEEILSGRGDICAFSGARGIAAILERRGCEHVKSLAQTEAA
Ga0207652_105466512F010678N/AGNRRRNYKGSYKANSIRKTLSSTPEASSKLPDYIVRHASGKMLSEEEKREAHHYAQKLKYPKGALIFNGSGEEDFLYCLPDSKEISVCREMARSFGFPTLEDGLSVLSKDELADSLAYNSLKVRK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.