Scaffold Ga0207649_10002661

Overview

Basic Information

• Taxon OID: 3300025920
• Scaffold ID: Ga0207649_10002661
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9912
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092272	Metagenome	107	N
F101407	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207649_100026616	F101407	GGTGG	MRRPVLGAAVLLGVSLLACLGPYPNVGEKLDVVNLVNGTSYIALDAGAARILILAPFDGGPAAAPFTRIDEQQPRAVQTLQGTYFGDATDRLKVTFSSTTLFSLPNEASKPVSDRDGAERTQFSPPRESRARIDTNTEEVLDLSGSGDVAGHFLTLLGRTAIITGTDATAAACAFHLANLAVESSEARIPGFNSAEMTQYLNRVEFFQGILSGTVSVNLVGLFSPVVTTTFSNYADFEGVVLDGVQVSSTNASGDGALTGILGFRIQRKGLPDLVGQVDYRAVSLTGGNESGDYLVLLDGGAEVPVPTGRRIPSLEQCLGL
Ga0207649_100026617	F092272	GGAGG	MRRPQWWAVLLVLVLPGAGIAVAHPVETQEAAAAPPPEAEVPATADPRDGWRHEFSPAWHMATFWSKESGSHYTFHSLSIGYLMSVNAAGPFLHLSWVIPLQARQDGRVHSVSSLYQNGGGIDLLLGWQWRKTVTPEIEFEGGPGLHLNVLNLGGKPGLTNFNALQIGPGGMTVLRWRPGWRPHKVGWTVGAVGALGIDLYDPLRSNDLRIGVALRLGVLLGVDLP