NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207657_10450491

Scaffold Ga0207657_10450491


Overview

Basic Information
Taxon OID3300025919 Open in IMG/M
Scaffold IDGa0207657_10450491 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1010
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032187Metagenome / Metatranscriptome180Y
F073390Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0207657_104504911F073390N/ADHVKFLAQSEAALSSEDIKDPSAEASLVGGKFFTDIWDNGGREMAQEIIRKSEKDIHDARKVAEAAEKSAELEGQIGID
Ga0207657_104504912F032187N/AMSNLFTVCNSNIAVSSPPSEPAEPSAGPHTKGDDEIRKMAEAIMDKVVDQLLNKAAEVVLRED

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