Scaffold Ga0207657_10003417

Overview

Basic Information

• Taxon OID: 3300025919
• Scaffold ID: Ga0207657_10003417
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16948
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010135	Metagenome / Metatranscriptome	308	Y
F025164	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207657_1000341716	F025164	N/A	VYLPDHEWPSDKADQPVLAPWQHAGYQLILSVPIFPNPPTIKSYSGPPEPGHKSYQLADYPDAVAALRRGA
Ga0207657_100034177	F010135	N/A	VSGDLGAGQRARHRDLVPAGGYRSEEFRAASRDSPAIIFICPYGTSISTLRWAIRRLRRAGYHVMAYETTTAVFMAADPAILRDLISAMRKDLESQISRLRSEGVTEFGFFGSSLGSFILYNCIGDAIPALRWGVFNTGGDIAQGMWRLDGARRQHVLRGWSLPRLEAAWADLQWPQFGRLDGCRFVFVSSRRDTIAPLDDIAPYLGPMRQAGAQVSVLEVRAIGHLTTIVAGLWQAPRIIAMVRPGQGVSRPWSGRRSARRRSRGRP