Scaffold Ga0207662_10134022

Overview

Basic Information

• Taxon OID: 3300025918
• Scaffold ID: Ga0207662_10134022
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1564
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032437	Metagenome	180	Y
F049209	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207662_101340221	F032437	AGGA	MRWKSRLTAFTICFVIGLAAALIIGVIVRRQRHRQRQTQITRCAIDDYFNRPEEVLAAIKSDEVDVRRAMFKRLLLRPEITTIYYDYERDLNYPERVDRARLEYVQLDDTSETEALLTFVRLEHPTALVFSRESCGWKLVGALSSWLRFEDYPYDNWLTLPTTIKPGIHELLVRESNGDATTYVRKARLLRLDHGRLAQIAEFDEEILEPVKEYVGYGWNDVKRKQSRNVTFSPGDNPVIQIETTTSFIKLRGSIPSYSYWSETDGVWHAAKRNWSARSSRVI
Ga0207662_101340222	F049209	N/A	TDTASRLGAYAGPILHWLYFTPLRKDPALWSKLRDRVRTLNPNDNEMSVALESLSQNSVVAGAEEVAPNAYLRSLRAIIEKKAGLNEESRASFSRALIESNDSAPWQSFAFLEDEPLEQLVALYLKENQPVAALKVAERVASFQPNKDSAVQAEATASRYQTLHRRAEERRRASHVNLLELLSIAAEQLGDLIRAYELEQLRLALLSKQSDRDLALARLDHLRDLRNECTNSQKRNHKCAGNHV