NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207662_10061920

Scaffold Ga0207662_10061920


Overview

Basic Information
Taxon OID3300025918 Open in IMG/M
Scaffold IDGa0207662_10061920 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2247
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026424Metagenome / Metatranscriptome198N
F035981Metagenome / Metatranscriptome171N

Sequences

Protein IDFamilyRBSSequence
Ga0207662_100619203F035981AGGMRDDDSSGDEILGADEILGADEILGADEVLAGGGDESAGDESSGDESSGDELVGLRLFRRKRKKGAPATNPIVQNRLAKQGVIVKTQGYSKGRSQSLGFEFLAVQPGGTVDVPANPQVLFKPKRLVYTGPVNTFVIQDVKIGRSSQFVASGPQSADAYPPTSTVDNMELDTARPGVVITLRIQNVSGVAGDFRATMFGQVAE
Ga0207662_100619204F026424GGAGGMMNLSLAQVKKFGSEIQSLKTKHEKAIQKADDVIEQGVEATLASATAFGLGIWQTRADHQKLLGVPVDLAVGLAAHAAGFMGMGGKAAPYLHSMGNGALAAHFHTVGRGVGKEMREKAGLAPVAMSGEGPAEGGSNLSDDALLEMARRRG

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