Scaffold Ga0207662_10025820

Overview

Basic Information

• Taxon OID: 3300025918
• Scaffold ID: Ga0207662_10025820
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3385
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000428	Metagenome / Metatranscriptome	1150	Y
F017836	Metagenome / Metatranscriptome	238	Y
F026147	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207662_100258202	F026147	AGGCGG	MTFGNPSTGTLAKLSPQLLTTRGRPIKFTSERLQQIRNLVERGESREGIADLLDVTIGSLQVTCSRLGISLRRPKFDNGARLLRQKAITLHSPVNRDESMLSQPIGEPSQGNSRSGPAEPAPAAKPQEDRLQTLEAGSPSVAIRFQYNGMERTTELPLNLDMIGRLAWVAEFRNMSTAELISELIMGMVKKDLFPEVLGKP
Ga0207662_100258205	F017836	AGAAG	VNLVAVVRVRADDESVARKFVPTVLGALGTVEIRLANENNAAGGHHATVTDVDFSIGSVKPFRAGSR
Ga0207662_100258206	F000428	N/A	HFGSGSTLQRNERVKLAASFWNNVGAGMVIVGMAGAFFLDKPPGAWAKIGIAIGGLVLGWLCYSIASNILTYMQKILHSK