Scaffold Ga0207693_10231545

Overview

Basic Information

• Taxon OID: 3300025915
• Scaffold ID: Ga0207693_10231545
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1451
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034683	Metagenome / Metatranscriptome	174	Y
F076292	Metagenome / Metatranscriptome	118	Y
F103763	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207693_102315451	F076292	N/A	LDDDLLDIPGYRPRQGWKPAAGTGVAPDVRSAARRRRRDRR
Ga0207693_102315452	F034683	N/A	MTGDHRVTPGLIHDILDALERHGYYRGDDQHADRAIGLIGDLAGIYEGTQDHPASAFMVPPPAPADPGPSRAGAVTLTRADAITVFAAAGIAADDKRYRVEMCPDCADQTCPDCRTHLRDIEAFDQMAGRMLQAAPAAGPGRPGPDRWSQPAADREAGQ
Ga0207693_102315453	F103763	N/A	VTPSRRKPARPASRTDATSLVPSPRSGERDVPETADPYDLPFPDHWPPGRREYVIVVDQLRGWRPDLPPSLAELLEAGPARTREPEPDLEAEP