Scaffold Ga0207693_10221914

Overview

Basic Information

• Taxon OID: 3300025915
• Scaffold ID: Ga0207693_10221914
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1485
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003277	Metagenome / Metatranscriptome	496	Y
F007784	Metagenome / Metatranscriptome	345	Y
F034672	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207693_102219141	F007784	N/A	TSVAYTADESDPPLPRFRPWQQVWQCNDVRVTITGRDPFSVEYDIGGMIWGGSRFTVVKGDLFFNGRPCLPLQPVGY
Ga0207693_102219142	F034672	AGG	MKKLLLAGIAALLLATGAAHATERLPEAMLGNWCWVEGGDEQNWNQQIFARVPPEGCHGGDSLIRIDQKGIEGEGSCTFGKIEQTGPNAFLIYTYCDDDTNGSTTFEIIDGKLVITALY
Ga0207693_102219143	F003277	N/A	VSRHHNFRSGQQNKLVSEPPIAAPDEHAQLVKADQRFRAALGQAIAAGGERIEAVEATVQLKRRTKLAR