Scaffold Ga0207693_10089646

Overview

Basic Information

• Taxon OID: 3300025915
• Scaffold ID: Ga0207693_10089646
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2410
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029219	Metagenome / Metatranscriptome	189	Y
F052819	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207693_100896462	F029219	AGGAGG	VARERSGLEQRRAELTRSLPGLSANRTDAYRRNSDALALDRAGVKHERPEEMVRLGEAVVAADAAIRAAQRELRDIDAELKLSPRPRLGARFGRAARRARAAQ
Ga0207693_100896463	F052819	GGAGG	VVEASRKRGPFDTRWQSAPRESVRAVPTAPPRRLRATEAADALDWEAFSNRYFPGRRRHDMEALTAYAACKQGREWRTSPARLSVVPTEHVPAAVEPVDLEAAARGGTRG