Scaffold Ga0207693_10051345

Overview

Basic Information

• Taxon OID: 3300025915
• Scaffold ID: Ga0207693_10051345
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3236
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002560	Metagenome / Metatranscriptome	548	Y
F007596	Metagenome	348	Y
F036872	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207693_100513452	F002560	AGGAGG	MVEHNPPPHADRVPPIPLPIALYISDGLVFELYDGGQPHRRFSIRWERLVPTKESEPEVASESPRTVSGVHKE
Ga0207693_100513454	F007596	GAGG	MPLRIRFRFDGKCSLHPRYDPARNGRPQHSNCEGCESLYVIHLYTKIAKKRAENENGIVVRTSSGREEQHAIDEPGQLSNTENK
Ga0207693_100513457	F036872	AGGAG	MKNAHLRFGWLTYVKSTEKTTTSIKLRLDRFIGEVLPDPPRQAKAHLISVVGGDTQISAVSAAISLGDRFMVEGPGVQPIRVCLERNAQCFKGSIQLAGRKKPLRHLIGMSEEFASGNMSAGSGRTLLASSDKRFVWASIAHIYGIPGIPEWANWFADELDTHRAVIHALGIGCDPAIVKGEKEQFLDWLSWGVESGAIPFPTQTGSIRWPGVSLEEIFPQA