Scaffold Ga0207693_10017128

Overview

Basic Information

• Taxon OID: 3300025915
• Scaffold ID: Ga0207693_10017128
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5782
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032401	Metagenome	180	Y
F038595	Metagenome / Metatranscriptome	165	Y
F068176	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207693_100171282	F038595	AGGAG	MYTLMSFVIPFVLIHHGFNSIVLKIISEIKSGLKYWCRTSKK
Ga0207693_100171283	F032401	AGGA	MKPMNLAEVRKHTGRELTVEEAAQYVSPGQSETVTRNQACALSLHSWSNSATDWLRLEACLVLLAQKRRQKSRAVSARIR
Ga0207693_100171284	F068176	GAGG	MNPQIAQAFLDGLPRMRAALLNSRRILGPIAYARHMHDLDTDERDAKAIVRRAQFHVVAGIALDE