Scaffold Ga0207693_10000401

Overview

Basic Information

• Taxon OID: 3300025915
• Scaffold ID: Ga0207693_10000401
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39528
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (80.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F035917	Metagenome	171	Y
F053711	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207693_1000040114	F031594	GAGG	MSVRPVTFNVDGSIDVVFDEMGHSGTIPAAEIVWATKPDGGHDHNFIVLNCPDGCGATSTWPVGGGADATMGQQMFVNKVTSEGCACGQIQPTDADAVGESHVRLNVNRLDGPGRWALA
Ga0207693_1000040115	F035917	GGAGG	MTDTPFQFKVVYVDPGDGLIVGMEPSGGAVGSAHKVAVIHDQAEYDVLMRTDPAYLSDDKAHILAAPDHA
Ga0207693_1000040123	F053711	GGCGG	MMNGRVQTEDVEGIVESVNPTGLKIGGAWVNVSRFHPVQLPDAGAHVRLKIDPKGYIVDLENLAASGIPTVLSAKDDRITRLAVLKAAAEFVGLWGQSREEVKSEHVLIIADKWLKWVEQ