NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207707_10651596

Scaffold Ga0207707_10651596


Overview

Basic Information
Taxon OID3300025912 Open in IMG/M
Scaffold IDGa0207707_10651596 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)888
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034683Metagenome / Metatranscriptome174Y
F103763Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0207707_106515961F034683N/ARGDDQHADRAIGLIGDLAGIYEGTQDHPAYPGPARHDAINLTHADASTIFAAADIATGDKRYRAEMCPDCPDQSCPACQVHIRDDEAFDQMAGRMLQAAQAAPAASASQSAPDRWSQLAADREAGQ
Ga0207707_106515962F103763GGAGGVTPARRKPAEPADRPAATPRIPGPRAGERDTPETAEPYDLPLPDQWPHRPTYVIVVDQLRDWRPGQPPSLAELLEAEPARTREPEPDLEAEP

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