Scaffold Ga0207707_10026813

Overview

Basic Information

• Taxon OID: 3300025912
• Scaffold ID: Ga0207707_10026813
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5035
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014985	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207707_100268134	F014985	AGGAGG	MSAVLLAVFNEYENAQGVRLELVRDGFPTDRVELTAACEPGRAACFPAEELRGKFVQYFRILLKADSDRQYAETLAERLHAGTAATITVHPRGAIETTRATKIIESGSPAEVVHRNLRNRWWGFAAARAEQPWIRHVWLEKSEVHCIYCRLFDSMGRVRI
Ga0207707_100268135	F014985	AGGAGG	MSAVLLAVFDNYEAADRVRLELVRDGFPTDRVELTAACEPGRAAYVPVEASRSKFAQYFRTLFKADADREYAESLAERIDGGAATVTVHPRGPVETSRAAKIIESGSPAEVAHRDLGNQGWEHAAARAEQPWIRHVLLERSDAHCIYCRLFESTHHAH