Scaffold Ga0207707

Basic Information
Taxon OID	3300025912 Open in IMG/M
Scaffold ID	Ga0207707_10010173 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025912 Open in IMG/M

Scaffold ID

Ga0207707_10010173 Open in IMG/M

Source Dataset Name

Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8163
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8163

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012927	Metagenome / Metatranscriptome	276	Y
F015272	Metagenome / Metatranscriptome	256	Y
F017897	Metagenome / Metatranscriptome	238	Y
F096106	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207707_100101733	F096106	GGA	MTLHPLALFVFLPANLVWAISRYRRHRPVVIGSGQGARMGAMMGLLSFTFFLAFFLISISFQRTQYRDIMITQIHQISAQNPDPQAQQMLQWFATPDGLITFTAIALVTILLICLALGSGSGALAIALRKNRQRP
Ga0207707_100101735	F015272	N/A	MWLSTILWLAPPFLQVWIAILMLRRGTHKEYRFFFSYTIFAIAAALAKFLLTEPGKNTWLSFWVAWGCEGIYAILGFLAIYEVFGHVFENFHDLRWFKYLLPVTAAIMLGIAVLIPLAHHAVDTDPLLEGIFALQVAVRCLQLGVFFLIFLLARIFDLDYRQYAFGIAAGFGIAVAGILLGTLVRTGLGLRFVIYFRYVPSVAYCMAVTVWLVSFFRVEPEDPFRDFRHLFTPDVFLGRLERYKEGVRGIFRP
Ga0207707_100101736	F012927	GAGG	MTAYAILLVILALISATALYFFLGRLSSFPCRTIRDVPAFLQPVDSAGMMELLNPQTEEYLQSVMTGVALRLEQRKSLHFMREHLLRMSHNAHILLEWSNAELKRQIVGQSEEDGQCYRDCARQLHVAAIEFRLFAILSLIKINLWLVFRTQSWLPLSPPSLAELNHLGSLRFFELYSNLTRAVSELGRHYGTEFRDELLRAWAVAA
Ga0207707_100101737	F017897	GGCGG	MALASPSMKGSQIKIVLLADRRHSQTAKALKGLGYGLMTTFTPDHAVAICVNNQVDAVILDQEHFIQTEGWSVAQSLKLIRRSLCVILIVRGKIVGSDLPAGVDAVVPDHDAMSLTATLKHLLKRF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207707_10010173

Overview

Ecosystem & Geography

Associated Families

Sequences