Scaffold Ga0207707_10000014

Overview

Basic Information

• Taxon OID: 3300025912
• Scaffold ID: Ga0207707_10000014
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 261972
• Total Scaffold Genes: 206
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 144 (69.90%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016194	Metagenome	249	Y
F087680	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207707_1000001410	F016194	AGGAG	MTRDSGTTDRLQRFIDHLTSLTEKHELNWERQTGSAHRYARLDNNLLILGPATPVSESDGPRYLFITPFDSPDCIEINSNDDDLGPAVMKLVKEVEATVENVPATDPFAINYDFLNRLKL
Ga0207707_1000001492	F087680	GGAGG	MRTNLFIAALSLIALCAGSVTAQTKQVAPVPGDPLELATGPATIADTPEKRSAILNLLERARQNNNLHVSGMNPFDLKASFNSSGSNENSGPGVLEESWLSGATWRWSEHLGSYSQLRIFHKGVAYDSNPGTYQPLRLQMIRQAVFWPVAGNFANNVIRVAEASWNGKPVTCALIAGPRANASQQRGRQWIEEEYCIDPETGFLQTYSIAPGTYNVYDYSNAFEFHGHSIARRITIVQNSIPVATVELNEMKDLNSTDESLFTPTPDMKGPGIMLGSPMRFPQIAKNNLAAAANGVVQPIIIHAALDIRGRVIEAEALQTSDSALSDAALKLVKSTNYGPMRNRDLVQRDVFVNVQFVAA