NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207654_10633660

Scaffold Ga0207654_10633660


Overview

Basic Information
Taxon OID3300025911 Open in IMG/M
Scaffold IDGa0207654_10633660 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)765
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047523Metagenome / Metatranscriptome149N
F097678Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0207654_106336601F047523N/ASLKSVEEVEAGIFEVVVTLQRGATAKLRMNTFTFQAFVTKFIEGPRPQRWLDKPICLLKKIFAPLWPSRKRQ
Ga0207654_106336602F097678AGGAGGMKPNPKWTAATLVVLAVATVHAMHAQAIAPIPMVDERDGASANGSKTYDEWQAPLSRSFRARFLDHRTAEDPIVGGAPGRGFTQRIFDGLEKMQIWDNAP

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