Scaffold Ga0207654_10019007

Overview

Basic Information

• Taxon OID: 3300025911
• Scaffold ID: Ga0207654_10019007
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3616
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001643	Metagenome / Metatranscriptome	659	Y
F020070	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207654_100190071	F020070	N/A	DSGTAEEPTKSWTATTDLKSDDLTPQRIPVRIIESHSQNGNRMLDKRSVEIRGTDGRVEPYQDIEKETLQVDATMVRATTRTFGKDANGRKALVQVTEEEKHTLPGDDSNVVRVTYNPDVNGRLQPIQREIVETKKIGKDLEETNTTVMLPNVNGGLAPVFKTQEIRKRAANDTVETEKTTWLSDVNGNWQVNEVSHATTRQEGTNRTTEERVSRLDFEGKLGEVSRVVSQESESTSGEKRNVVEAYSIDVPGTTRDGRLHVVERKTTTESSSSTGERAREQKVEQTNPGDPHSGLRVTVLVDGRMVPGPSGEQSTVTIRARDSNGKLGIVSVDTTKSDQIPTIRIQQAPAERP
Ga0207654_100190072	F001643	AGGAG	MLEELMNIPTDTLIDMLYIILAGDFAITANDAAEIEQIQRELQRRGGAQRWSFQTVN