Scaffold Ga0207684_10100694

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10100694
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2469
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000517	Metagenome / Metatranscriptome	1061	Y
F009201	Metagenome	321	Y
F018957	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_101006944	F000517	AGGAG	MRMCLALLLAAVLALSPFDGIAGERQIVDVKELAGRWQGWVTREQGQERATLIVSADGSYRALTPQGASTEGKFYLQDGKLRYRSSRTTGTASLSEDRGKTMLTVMPEDPKYHTGRAEYERVKE
Ga0207684_101006945	F018957	AGGTGG	VVALVAGCATQQASQPDCTMKWTGQPPIQVDSCTGRGEDLTAGWHWYDYVFGIPFGIVGFYDSARDAE
Ga0207684_101006946	F009201	GGAGG	MVPNVSLRFLNRRANRQICRVCHELAELKTERLCAVCTHIKSQISLRFAEAVGGTISIPAEQQCKRSGCSCAACDRRTLDLHPRYVFDLARADRREIHFHPRCHELWLEAVKGLNSGPEQATDIGQG