Scaffold Ga0207684_10086938

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10086938
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2663
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000432	Metagenome / Metatranscriptome	1148	Y
F012952	Metagenome / Metatranscriptome	275	Y
F024966	Metagenome / Metatranscriptome	203	Y
F052726	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_100869381	F012952	GGAGG	MTKRWPGIVVAAFCLLTLATSASAEGAWTLWMMGASSPWDSVATFPTREQCVEALHQQAQAVEKLGLKVTEDVPGGSFAGTDADRDIRGKCLPETVDPRK
Ga0207684_100869382	F052726	GGAGG	MTESSASKPEHVYRGWKIRITDMAADTKFSARVEVWKPEHDPRSHSGIVVPFLKRVASPADVHAAALEAAKEWIDEEMV
Ga0207684_100869383	F024966	GGAG	VPLLRYHASMPAPTNERQSLERERAELPSQIAAYEVELDATPAEHKARRERLAWQLRRAQKRLVEVEARLAGLGG
Ga0207684_100869385	F000432	N/A	MPDESILREKARASVQNGKLPARAPDRTWGGPGVGAACSVCELPVKKDELEFEIQFEHDGANPGLDKFHVHIRCFAAWEFERKKAQSP