Scaffold Ga0207684_10037978

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10037978
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4086
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F029502	Metagenome / Metatranscriptome	188	Y
F044699	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_100379784	F029502	GGAGG	MLSRSEQYLAKAEKCQQISDAADISGTKRLYGVMASQWRQLADEADEADKKPLLGKIRQTYLLREIDKAEGAIRELMALRGLTA
Ga0207684_100379785	F044699	GGAGG	MGATMLRIIYSLLLLVIFLCSAASVIWLLSFIGFELLLFAGVCFIAFTSAVTLAEELVEWRRRREASALHRQLLPPAS
Ga0207684_100379787	F000461	AGCAG	MTALTAMDKLLFWLGLGAAQKGARSNEVKPGRHWVVSLVAGILIALLIAAGAFILLVSQQ