Scaffold Ga0207684_10028015

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10028015
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4799
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000788	Metagenome / Metatranscriptome	891	Y
F000792	Metagenome / Metatranscriptome	890	Y
F001440	Metagenome / Metatranscriptome	694	Y
F005164	Metagenome / Metatranscriptome	410	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_100280151	F005164	AGG	MLTNFRVGDRVEDRKTHKRVRITFVYSELERKGEVIEVLFDGRDEVVDVAADGVRKVSTRQS
Ga0207684_100280153	F001440	GAGG	MKIFFKSRMPSAKSIGWAIYAVGFVIWLFGYVSTGHAAAFDWEGGTPRWISSFVPNLEAELGLALMFASMIPIYGGAVWTRA
Ga0207684_100280154	F000788	GGA	MKPRTVYEKAVQDFTETARRLARLNQHFRQASFAEFEMLMGLDDGVLKRYGLPKPTVERALIEVYRTVVLDQQR
Ga0207684_100280157	F000792	AGG	MREHVLLFCLLGLVVIATTILVIAPGVVTWALALIE