Scaffold Ga0207684_10013057

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10013057
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7190
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000432	Metagenome / Metatranscriptome	1148	Y
F026319	Metagenome / Metatranscriptome	198	Y
F054762	Metagenome / Metatranscriptome	139	Y
F075888	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_1001305715	F026319	GAGG	MSYNIVESMVRRRLREKNGQVYCAECLAKDLEQDPTEVRAAMDVLAPCQNFATGSCPCGHTGLMLRWKG
Ga0207684_100130575	F054762	GAG	MSAAFDNHALAALRAHAGAWHCMLCWAREANLNPAEDLVRLRLLARRLRFSREHELTRAGRCDRCGGVIKDDVLVREGASGSARATLLE
Ga0207684_100130577	F075888	N/A	MTAPSVDELRQQVRARLSEGRLPSIDGVSKSHRGTGRPCIVCRRAIGSTDVERELDGVGIVLIAHEACYKLWHEESKARRDSSI
Ga0207684_100130578	F000432	GAGG	MPDESILREKARAVIESGKLPSRRPDRTWGGPGVGAPCSVCGLPVTKDELEFEIQFARDGDNPGLDKFHVHIRCFAVWELERPKSNGSP