Scaffold Ga0207684

Basic Information
Taxon OID	3300025910 Open in IMG/M
Scaffold ID	Ga0207684_10005510 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207684_10005510 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11662
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11662

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (78.95%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_1000551010	F004186	AGGTGG	VHPRRALLVIAVAVLTVGCGVPTPAPPPSAKEVLAKPQQSNLTDAHFAVTGKITNNGVTVQLVGDGALVYKPKPAGRFKFTTTVAGQTLTIEEISLDGTNYGLTPASSMWVSTKSASGIDPNAFSGASDQKYVGEETLSQGKAWHASAKDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLTFDHYNTGETIKPPPADQIQPG
Ga0207684_100055107	F006952	AGGAG	VIGPLGTANHEIREAERIDQERRRALLTEPRRLTDQLLGQLEELNLDGVRIVPGSYDPGLAEIRSQLVGWPGIGAPLLQRLQSGTRTAELIETVFTIQEAIAPPTLPAGAVIFEEPDLV
Ga0207684_100055108	F004349	AGGA	VKAKPRATLAIAVLMLTGCMANQAAKTPTAPEILNKPDQANVKDAHFTLVAHIVSAGVTFDATGDGAIVVKPAQASKFTMTATIGGQSLKFEEIIIDGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLKLGKAWHVKAKDASGSPFEAWVRESDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPASDVQS
Ga0207684_100055109	F004003	GGA	MTKLLRAVLAVVAACLLSACGGPGTPLGPPSPQDVLSKPVHAGNLKDAHFLVTGKFATNGATVGVTGDGALLYKSPTAGRFKFQTTVAGQQVSFEDISINGTDYTLTIPGNSKWVAKASTSGLGPSSFTGTSAFKYVGEERLAGGKAWHASAKDNDGNPFDGWIRESDGYPLKYVITQQGNSLTLTFDKYNTGVTIAPPPASQVVKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207684_10005510

Overview

Ecosystem & Geography

Associated Families

Sequences