Scaffold Ga0207684_10001116

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10001116
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29985
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (83.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011956	Metagenome / Metatranscriptome	285	N
F015846	Metagenome / Metatranscriptome	251	Y
F069108	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_1000111613	F069108	GGA	MWAGIVYGTLLERNGNHILLSDGAQICLDDAVQCDFPVGTYLKVTYAEINGRKFARDISQSDSFHALDAPS
Ga0207684_1000111626	F011956	AGG	MTPSVVTLQEVLRHHRTLSRRGREFYESLLAHGDVLAVRLDYLPGAMLWLVTTPKQARLMRKAREGRTTSDVCVMSLAEAQELFTTVGDPTPTTLYEVAAWLLAPAPGDFSTPAPEEPEDPTSL
Ga0207684_1000111637	F015846	AGGAG	VNVLVLDETLELSAPVRELANLHGWQPHFVGSLHEVELAVQAHGRPALLVVNLQPPLTGWELGQRLRGLGLESPVVVLGARGPEGEA