Scaffold Ga0207684_10000994

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000994
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31792
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030920	Metagenome / Metatranscriptome	184	Y
F038890	Metagenome	165	Y
F046597	Metagenome / Metatranscriptome	151	Y
F099930	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_1000099412	F038890	GGAGG	MFQITAETCRAFTFAEVLIMAAMNVESIRLRSEGRAGANGAAAQSKYARHVVRLGVPKVPQL
Ga0207684_1000099418	F099930	GAGG	MAHSAPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0207684_1000099422	F046597	GGAG	MLRVITSHTVDILTFKLEGRLTGERAEQVRTLVIRSNAEMRLIVDITELMFVDALGEEVLSFLKRLGAHFLAQTAYSLDVCERLHLPLVPKQDSDTLSAGPDGNGRPLGH
Ga0207684_1000099427	F030920	AGGA	MIITFLIAKIILGGYWLMLAPVLFLPLGIFSLSSQVRRGLFGYVVLPLAVVFAALGAIFLFTLTLLDAVTVVAGVHAIWLLAAGITLLSRNRKQRGSQFQGLRTAKSSITR