Scaffold Ga0207684_10000297

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000297
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71105
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (60.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000719	Metagenome	923	Y
F002026	Metagenome	603	Y
F004395	Metagenome	440	Y
F022011	Metagenome	216	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_1000029712	F022011	AGGAG	VSIEDKNDLLGSLDERIRRISKEVLVEHQAREQQSGNSSVADSEDEKLAVTLRRIMAKEFVSIKETALLLNCSDGHIRNLVGKAQKGKASHPIPFLDLDGVTVFPRVKLLEWAKQPKKKLRAVS
Ga0207684_1000029718	F002026	GGA	MDMTRVATWFLLLTMVVTSAAAQSDDEIKGKNWQANPQIIAIRRIVDSANAQVTKGVFQTEHRICEEGWFRRLRIARDSKGTVRWYQHYEEGEDSSWDDNYYYDDAGRLRFVIMTSYAANGTREQHRAYYDEGGHLIYHGRRLLKGPGYFGPPVEDLKQLVHMDPKKDFAESAQGCKEVKPSPKRHTRKS
Ga0207684_1000029754	F004395	GGAG	MNKYYLRFSLLILVALVASSVNAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTPENFQVLDDGKPREIAYFTREGQARKPLALILILDLREDGAGRFLKRAEILKAMEDELAKLPPGDEVAIMATNIGEDEGRTWLTEFTNERTKIAAALARVPAMCASSDAPPPEGISSQNNAGTDGVKTDEIIVKVETNKGRNGSIVTRKTRRDGRVEVTRVSKDGKMTIELGEVYDMVAAVQDATQKALELRPNSQMSLVWVSDGIAPIFFEDRDATEQVLIRENVIFNSLTVELRTLFKFLLPVGKPIAGWLGMSLYGSAKHLAQRSGGEAVKVGRVKDYGSGLARIIGNLTARYSLGFALAESEVDDGRMHTLEVRVNAKDEKGKNRKLQVSSRQGYYMSTTASKEALRTQ
Ga0207684_1000029755	F000719	GAGG	MKTIFIAIMLVATFTSATVVRAKGDDFNSVVKMIEQFYRVKHTGIPFLAKAGMKVATTAARIKGGEAKRLAEAGSIKLAVFEDQDFAGDFMKFRTSLNDALNATWMPLIQTLSAKNEEQVYVFLKTAGEKYDVLVVTIEQREATVVQVTLSQKNLAILLRDPEGTGKAITEEATITDPE