 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025910 Open in IMG/M |
| Scaffold ID | Ga0207684_10000144 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 127105 |
| Total Scaffold Genes | 128 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 76 (59.38%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007403 | Metagenome / Metatranscriptome | 352 | Y |
| F010048 | Metagenome | 309 | Y |
| F012259 | Metagenome | 282 | Y |
| F018592 | Metagenome / Metatranscriptome | 234 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207684_10000144106 | F007403 | GGAGG | MRKGGAEPDIPLEAVQSLLTRVIWQAVADLSVEGYRSEAERFFDGETFVEYCDILGWNVGRARASLWRFIDSGSRISGNHLLTPGNLAGQAAQAIAG |
| Ga0207684_1000014416 | F010048 | N/A | MLPVLVIIVALSIVTLIAFRWFERYHYTEAWRKSEFRGLAFGFLMWFGGLFGHRVPPPPQAKIEFATKPGDASPPKSGGSTLADDAADEKE |
| Ga0207684_1000014428 | F018592 | N/A | MTPSTWLKARAAELGAALCTAAVLISGLAIGLPFLRARIAETLLYSCCCVSAVVLRAVLDLAVRVVALAVRSLRPAVPVMTRLKPSGA |
| Ga0207684_1000014431 | F012259 | N/A | MSRLIRRPVILGATLALSLLTLLSFGILATIVVLAAGVTAAVLVGRHQAGLFKIRTRPRGRRGPIWRPTVQHQELPKPTEDPVIAFGEPVVELFESRTPPLAHLQLRAGLRSQLDGFALGRTKRIIDAPDLLAHAAADAESWPHVEAAVQKTLALARARGVEIIPDGQARLSQALALSAVQGVLLAEWRQLEDGKTVWEGTNAQIRASDAFTIQRITEAMERRQLPDLFGGIARRPANFDVRLLLPYTLATAFYLRLHGNPPRAFAA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |