Scaffold Ga0207684_10000087

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000087
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 173557
• Total Scaffold Genes: 193
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 135 (69.95%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001373	Metagenome / Metatranscriptome	712	Y
F008404	Metagenome	334	Y
F009086	Metagenome	323	Y
F010513	Metagenome / Metatranscriptome	303	Y
F023685	Metagenome	209	Y
F054730	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000087109	F010513	GAG	MFLACPNRCSTNRFELWNASVFVDASGRYLDYKAVDAPLYRCGECGSPAVDLGEVPGAMAADRAVLETQPREYACPNCEELFSAPKDQTLIVCPSCGQTFPVGEAG
Ga0207684_10000087164	F023685	AGG	VLISLRPHRTWRPAVAITAPGYRLPIARLVNPAFDRNLRSAESALDRVVHDGWFTLAGARPSRYRIYLQRPSQMRTYLELINPPRPRFPPGGRAALFRLWDSAPRGARIEVTEYLVITVLRRR
Ga0207684_10000087189	F001373	AGGAGG	MVSQMEAQHTDADAKEELLLDLKSKNTTRSIKDFSPEGIRLESNLEGEAKGVYNATFYATITMLVKPDRTIDYEVRQIHTTSDGDTILVYYKGKSIIESPTHNKFVGETTFQTASKKLAWLNGMKARHEGEYNPVAGENDFRVYGKR
Ga0207684_1000008727	F054730	N/A	MAEHQPPDGGDYTPEHEHSEATDRVREAIRDGFTIMVGAVWWAFDQSDQWAHTWLHEGKTSREESRKRFDEFAARTRRAGEDLGRRVQDSVRTARTSMPLATREQVANLERQVAELTRQIDSIRGTSETR
Ga0207684_1000008752	F009086	N/A	MLPAADCNDGVTASTAGNPLYQSELAKNLAQASSTDLDLPRSLGGFRARIHLPYRSGFNRFIRVLGMLTLLVSSLGLLAAVAGFPLNWLSMLAALLISLVLIGFSVRPSLRKPKF
Ga0207684_1000008777	F008404	GGAG	MKNTMGVELSESERTLVECYQALVRVLKESKDLAPFERRNALKAVAALWQVVNGLDLDPGNIYEIGA