Basic Information | |
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Taxon OID | 3300025910 Open in IMG/M |
Scaffold ID | Ga0207684_10000087 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 173557 |
Total Scaffold Genes | 193 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 135 (69.95%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001373 | Metagenome / Metatranscriptome | 712 | Y |
F008404 | Metagenome | 334 | Y |
F009086 | Metagenome | 323 | Y |
F010513 | Metagenome / Metatranscriptome | 303 | Y |
F023685 | Metagenome | 209 | Y |
F054730 | Metagenome / Metatranscriptome | 139 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207684_10000087109 | F010513 | GAG | MFLACPNRCSTNRFELWNASVFVDASGRYLDYKAVDAPLYRCGECGSPAVDLGEVPGAMAADRAVLETQPREYACPNCEELFSAPKDQTLIVCPSCGQTFPVGEAG |
Ga0207684_10000087164 | F023685 | AGG | VLISLRPHRTWRPAVAITAPGYRLPIARLVNPAFDRNLRSAESALDRVVHDGWFTLAGARPSRYRIYLQRPSQMRTYLELINPPRPRFPPGGRAALFRLWDSAPRGARIEVTEYLVITVLRRR |
Ga0207684_10000087189 | F001373 | AGGAGG | MVSQMEAQHTDADAKEELLLDLKSKNTTRSIKDFSPEGIRLESNLEGEAKGVYNATFYATITMLVKPDRTIDYEVRQIHTTSDGDTILVYYKGKSIIESPTHNKFVGETTFQTASKKLAWLNGMKARHEGEYNPVAGENDFRVYGKR |
Ga0207684_1000008727 | F054730 | N/A | MAEHQPPDGGDYTPEHEHSEATDRVREAIRDGFTIMVGAVWWAFDQSDQWAHTWLHEGKTSREESRKRFDEFAARTRRAGEDLGRRVQDSVRTARTSMPLATREQVANLERQVAELTRQIDSIRGTSETR |
Ga0207684_1000008752 | F009086 | N/A | MLPAADCNDGVTASTAGNPLYQSELAKNLAQASSTDLDLPRSLGGFRARIHLPYRSGFNRFIRVLGMLTLLVSSLGLLAAVAGFPLNWLSMLAALLISLVLIGFSVRPSLRKPKF |
Ga0207684_1000008777 | F008404 | GGAG | MKNTMGVELSESERTLVECYQALVRVLKESKDLAPFERRNALKAVAALWQVVNGLDLDPGNIYEIGA |
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