NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10000081

Scaffold Ga0207684_10000081


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10000081 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)178619
Total Scaffold Genes162 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)119 (73.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000687Metagenome / Metatranscriptome937Y
F001347Metagenome / Metatranscriptome718Y
F002141Metagenome / Metatranscriptome590Y
F011248Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_100000811F001347AGGAGMATAAMACGERRFGAAYTGRILLALGVLGLVVGLWATQDDPRPSSHPALMWISIGLVGAFAALWIVLGKTVLTISDSGVRRESVSGQQEMAWNQITETRYRVIPINVYAHFGLVGALLAMSSKSRRAQLSLELVGSDGKKLKVTSIFRDASDAIGSILGRILPPMVQSVKARLQRGETVQFGGIGLSTAAVIWKSNSIPVSQITKAELVGSNLQVKRQGKWLAAISVRSDKVPNVLVFLEVLESLAPQVKSTGIDPLARVRI
Ga0207684_100000813F011248N/AMRKVGLGLVVAAYALLLYTSLAAPAYARAHPQLGVSMLAEYASPWPVALACALAVAVAGIMLALIPIRRGERWALWTSLAMLIVLLVPRIVTDPRCLVVLDPHQHGCHTFMIAVVLGVVGLALARR
Ga0207684_1000008143F002141N/AMAVSVEMQHTGDSGLQADVRAVIEHVLADRPGDWRVAIVGSQANDRWEMKIVGPNSFERSYTLEGSADEHRPEVIRVILGKMLPRKKA
Ga0207684_1000008154F000687GGAGGMIQRQNESHLTSAESANGSVHQVVRQAHEELRQLMQQRAELVKRIGTLKQTIAGLANLFGDSVLSNELLELVDRKNNGRQPGFTKACRMILMESNRALSARDMCEQIQQKLPPMLARHKDPMASVTTVLNRLVEYGEARAVILENGRRAWQWVAEADTQSSSPDASAKMWPHA
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