Scaffold Ga0207684_10000041

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000041
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 262530
• Total Scaffold Genes: 282
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 178 (63.12%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004299	Metagenome	445	Y
F009835	Metagenome / Metatranscriptome	312	Y
F015576	Metagenome	253	Y
F032181	Metagenome	180	Y
F036609	Metagenome	169	Y
F057173	Metagenome	136	N
F057753	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000041192	F009835	GGA	VTSVEGAILVWLAIGVGIAGGVFIVARSAVQIASVAYRVIEKEMDARTATRQTTLLSLAIVAALIVTAFIAGFAILVMFATLLEGSGLINGT
Ga0207684_10000041244	F004299	GGA	MPLRRGEWGLALFLYFLLTVMVGADWVGKLGADALFVKRYGVQNVPWMYIITPIAMLAVSALIFFFIDRMRRRTMLLLYVAAVTLLSVGIQYAITYNAIGSIVQPISYVFAHGVKETIYILFWVYAGNLYDSEQSRRLFPFFAGSVLVGKIVGGFVGAAIAPLIHAENFIGAQAVGFFVCFVALVLYRGLPEGRSGHVEIKDRPQGVRATIRESVDGYRAVTSDSLLRTFGVGVFFWYFLMQFANFLYLLGLDQSSVGNTSVGREDFFAQLYASVYTSSSLVALAIQSFITSGLLRRIGIAWVLFFLPLWFLGTYAAAAWFNLNLVTGVALQLGERIWIPALHRPASELVYSQVSAAIRPRARAFLSGGVNAFGNMVAAVSLILGLRAVDMGLFGIRTLLGIGASLSLVYVYNAWHTRWLFGRRIAQNLTSPDPDLRRNAADMLASESSAVPEDVLRSLDGRIPADVEHGVRLALTRRGILAVAADVTD
Ga0207684_100000413	F057753	GGAGG	MATLLRASLLLRVGHGERQLVVRELREDQRVMQRINPGTPIDERPWTEIGRYKDLEIERARLRADGWEIEEPSRH
Ga0207684_1000004139	F015576	AGGCGG	VCAAVSDRGRLREARELAYDPAHARREALGRILRPRADAIQDDTLGHAYRATNFLGLGALAAKRWAAISNRAMPTCLAALEADDAERIALLDQAGSYIHELRAAGFQRFAMKPLTSLGFRLALREVKAHARAEGFDPDELEDELRVFQRAFEARIIYRG
Ga0207684_1000004163	F036609	GGAGG	MAALIEFVCIATHAHHGDPSITLEQRAWAYCAAGANDDHQWTRIDPTAVETLRSPARNGRLHLTPDQSDERTLTGRPAR
Ga0207684_1000004183	F032181	AGGAG	MVSNVLEMDQEELAKLLKSFKTKYAKDPEWLEVRAGFPKTWPI
Ga0207684_1000004196	F057173	AGG	MSEGDPVGGFLLLGSALCAIGASLVVCYVIWMNTWEGWESWNARTGLDAERAEGERVFRRLERK