Scaffold Ga0207684_10000016

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000016
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 409263
• Total Scaffold Genes: 426
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 290 (68.08%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004945	Metagenome / Metatranscriptome	418	Y
F005396	Metagenome	402	Y
F006406	Metagenome / Metatranscriptome	374	Y
F008325	Metagenome / Metatranscriptome	335	Y
F008403	Metagenome	334	Y
F016601	Metagenome / Metatranscriptome	246	N
F022498	Metagenome	214	N
F024083	Metagenome	207	Y
F035564	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000016154	F016601	AGGAG	MKPLNGELAARAWDFAQGLDLEEYRRLQSEVRTTWPATAKLQGLDFDRAFLAFIAERLLDKAA
Ga0207684_10000016157	F005396	N/A	VASSRRPGLLLSLLAATLLSACADDQSQPPPLQATASSAVGCKSGQGYQHTTLGYHLCFPNGWSSRDYTAEPGSGGAVSVVAFGPSSAVPVHVPTSGTFIPPIELRVVAGSKDQQEPSLAQGNQVSQITVGGLAADKIVVVDSGPANGATIVVLEHQANTYEIEEAPGDTYDTAFAQVLASFSFPAS
Ga0207684_10000016210	F022498	N/A	VLTEEKALSVALGKMRRLRRIRRLSRLTYWAAWGVVGLVSLLLLVGGIAGLASG
Ga0207684_10000016245	F008403	GGA	MLEINDLRRRIAKLKFERASVTIIEELEAQLRILKAIYDSAAGLYAAGEKDRRLQTSFGEREFGSWTFDNVYFYVYEQAVAIEPDGQDLATLIWRHDYTAPLVSHLATK
Ga0207684_10000016264	F004945	N/A	MSLVDWSVLIMGGWVVVIVVAALVLTLRPGAGELEYDTPTSEPLRLRQASGVMPRRAWGFRPPVHHSRYDPAPWQLQPPRADEDSLENVDRATDIKRELGSEHPPWERLDRQGL
Ga0207684_10000016308	F024083	GGAG	MSSNATLRWASMLGTLVLALLSSGVVATSPKPAQAPLHPTVTLLPNGATVQSKSYVS
Ga0207684_10000016347	F035564	AGGAGG	MDDSEFLRLLTHIHDEMLELVKEQHPSHEQFAAWLLGQIEGRLRMRIGTVKTT
Ga0207684_10000016357	F008325	GAGG	MIKRPALSIALAMGATLLMGISAAASSTYTEWIHGSELPNATTTEGQFVGEATGSYDGTWYIDVRHQDLSHHPAYITGGSFQLDTFINGWPSAIKGSFVPWGGTVSQISGFSGCTNQQYAVHGALNNVGVNGGNGSGSFSATLTHYRTYVWFVGCVVYAATISGTVSLTF
Ga0207684_1000001656	F006406	AGG	MMASTSDGGSRQELTSELAALDRQLRDLSEQWEAVERSIGEKIRRRRELIARQEETNEDHAEEINRLQSDVYALRDRLDQLRDSHLDFSALYRILQQART