Scaffold Ga0207684_10000015

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000015
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 427232
• Total Scaffold Genes: 471
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 337 (71.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006760	Metagenome	365	Y
F018293	Metagenome / Metatranscriptome	236	Y
F024278	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000015225	F006760	N/A	VLLSGSVIVLAYVAAAAVIVPAVSMIGFGKIPRFLRQGAETSKTRTRIEGIGLLLIGAFILTDALAADLGRRSEVPQDWILLVWVLLAAGLIGIRYLAGRADIAVRADRKPHDPAA
Ga0207684_10000015362	F024278	N/A	VLTVVLLLSGVYLYLHLVADWLAFLVMGVGAGIAIALTGSVIHDAFAGQRERR
Ga0207684_100000154	F018293	AGGAG	MNQLNSYAETGRNEPTPIASLDAQLTELIEFVWACEAAARSESRLDRYGNNWGSR