Scaffold Ga0207684_10000008

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000008
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 601602
• Total Scaffold Genes: 604
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 413 (68.38%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014654	Metagenome / Metatranscriptome	261	Y
F015041	Metagenome	258	N
F020589	Metagenome	223	Y
F040023	Metagenome	162	Y
F041677	Metagenome / Metatranscriptome	159	N
F058019	Metagenome	135	Y
F075919	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000008132	F041677	AGGAGG	LYYGGGGLLIVLGIIALVIGWTLVGIILIVLGLLSGGFGFYSGRRVP
Ga0207684_10000008391	F015041	N/A	MSQLNVIVIHVRAEQAAAYEKLFTERQLPRWRDYHARGKFISARFFRSQFGSDERRAVVKYVIVVEVPSMAEHHEHDQDPDFQEFDRLADEFQPEGPLVFGGDLLHSVG
Ga0207684_10000008400	F075919	GAG	MTGLTRLRLLSLVVIGLIVVVAALTVTSYFWVQIPLLKFTLQAGECKWGPPLAGVYLSGRLRQLDRCRTVSGTVGCIKLEPDGDYHVRLRVDTQYAALLRPANRLQTCSGQPGPHLVVEVIPQHPQGVLFRSNNADAGGFIDPTVPRPGEYITVTGPYVIDTNSLHRILYQGQAAENWAEIHPAWAIRVGRAANPGQPNEFGPDFGE
Ga0207684_10000008418	F014654	AGGAGG	MASYTIEIPDRLHYEIQERRHQIDVAGIVTQALTAAVSKGHPMGNPGPDATEAINQMFSG
Ga0207684_1000000855	F040023	GGGGG	MNKPVPGASEAAGLVNEMRMLVQTAEPTTEFGDRDQLEHLVSARVATVLMVLLVMIIFVTSALPDVGPSLAKVVEAHL
Ga0207684_1000000862	F020589	GAGG	VLFTASTISSSEIFLYDSASSAPQQLVSLGAGPPPEAHFISSQKIAYVDSTTQTSAQIMSIDLSTRASTTELTVNGNVPAFAYSHDGATLAYLLHGTADGKASLHVRRGGQETTLNLNAIPGRGVGRDDELRLEFAPDDKYLLMVDTFVGNQGQSPETGQFLILRAADNTVAFLPPAGVSANATMATWARHSDRVYYRDQVGVRTWDAGTTSVGTLATALHWYDPAPSPDDAWLAFTDIDAQFVPRVRLYDLRSGQTVATVTAPRSHPIFITADTVWYLEEQPCQSECLAGPSQTSGKVLAYNLNTKTETALPFSDVHNLTQLAVFSR
Ga0207684_1000000894	F058019	N/A	VSQPERRDDSPEATLEIPTEWLMPWLDLDAVRQVQRADTVATMTGEYLSLSGVELVVERRWLREAFWGQIKQAITRGYIYKSSAVQVTLRGERREHERRSGLSKAS